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Getting Started with R
Packages
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This lesson is called Packages, part of the Getting Started with R course. This lesson is called Packages, part of the Getting Started with R course.
Transcript
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Note: If you get any messages from R about conflicts when loading packages, don't worry about them for now.
Your Turn
Working in the console, install the Tidyverse package using the code install.packages("tidyverse")
Check in the Packages tab on the bottom right panel to confirm that the tidyverse package has been installed successfully.
Learn More
There are thousands and thousands of R packages. What this means is that, if you ever wonder, can I do that in R, the answer is probably yes!
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S. Revi Sterling
March 16, 2021
trying to install and load skimr and getting:
> skim(mtcars) Error in skim(mtcars) : could not find function "skim" > skim(mtcars) Error in skim(mtcars) : could not find function "skim"
David Keyes
March 16, 2021
Did you run library(skimr) after you installed it? It sounds like you installed the package, but didn't load it in your current session in order to have access to its functions.
Xinru Guo
September 6, 2021
Probably you forget to quote skimr ?
David Keyes
September 7, 2021
Once you install a package, you no longer have to quote its name!
Kathleen Carson
March 18, 2021
I have some Conflicts with Tidyverse. Do I need to worry about these? How do I resolve them?
-- Conflicts --------------------------------------------------------------------------------------------------- tidyverse_conflicts() -- x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag()
David Keyes
March 18, 2021
Nope, those aren't actually conflicts (despite the fact that they are in a scary red color). They're just saying that the tidyverse functions filter() and lag() will be used instead of the functions with those same names from the stats package.
Xinru Guo
September 6, 2021
Thank you!
Harold Stanislaw
March 18, 2021
Should we occasionally check for package updates?
David Keyes
March 18, 2021
Yes, definitely! I don't have a rule for how often I update mine, but I just posted a question on Twitter so you can see what others do. In terms of the mechanics of updating packages, see this blog post I wrote.
Kateryn Pino
March 28, 2021
Hi David, I have two warning messages installing the packages:
-- Conflicts --------------------------------------------- tidyverse_conflicts() -- x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag() Warning message: package ‘tidyverse’ was built under R version 4.0.4 > library(skimr) Warning message: package ‘skimr’ was built under R version 4.0.4
Let me know what is that means and if I can continue despite them. Thanks!
David Keyes
March 29, 2021
Despite these looking scary they're nothing to worry about (they're just informational)! I can explain more if you'd like (just let me know), but you can continue with no problems at all.
Kateryn Pino
March 29, 2021
Thanks for your quick response, David. Yes, I figured out that functions' packages work despite these warning messages. In any case, I would like to know more about them. I mean to understand what it is about to keep in mind. Thanks :)
David Keyes
March 30, 2021
Sure, no problem. Here's a quick explanation. Let me know if that helps!
Kateryn Pino
April 7, 2021
Thanks a lot for the explanation!
Tatiana Bustos
July 20, 2022
Ah, just read this!
Lauren Nitecki
June 18, 2021
When I run the library command, I get the following error message, any suggestions on how to resolve this issues? library(tidyverse) Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): namespace ‘ellipsis’ 0.3.1 is already loaded, but >= 0.3.2 is required In addition: Warning message: package ‘tidyverse’ was built under R version 4.0.5
David Keyes
June 21, 2021
It looks like the tidyverse package didn't get installed because the ellipsis package needs to be updated to a higher version. I'd try updating that by using
install.packages("ellipsis"), then seeing if you can use the tidyverse. Let me know if that works!Lauren Nitecki
June 21, 2021
That worked and I did have to install another package called install.packages("vctrs"). I ran the ellipsis package but it also gave me an error message with the namespace "vctrs", so I installed that package as well. The tidyverse and skimr packages are now installed and the libarays are working. Thanky ou!
David Keyes
June 22, 2021
Glad you got it working!
TIna Thomas
June 25, 2021
Hi David,
Here is the error I am getting:
> skim(mtcars) Error in skim(mtcars) : could not find function "skim" > library(skimr) Error in library(skimr) : there is no package called ‘skimr’
Thanks for advising.
David Keyes
June 25, 2021
Hi Tina, you need to install the skimr package first using
install.packages("skimr"). Then it should work!TIna Thomas
June 25, 2021
I figured it out. I highlighted it and then ran it. Seemed to work just fine. Thanks for the reply!
Brooke Callaghan
July 12, 2022
I'm having an issue with installing skimr, ran the above code and got the following message. Thanks for advising!
Do you want to install from sources the package which needs compilation? (Yes/no/cancel) install.packages("skimr") Error in install.packages : Unrecognized response “install.packages("skimr")”
David Keyes
July 14, 2022
I usually just hit yes here. What happens if you do that?
Will Donnelly
August 5, 2021
I'm having trouble with opening the exercises.R file. The script keeps informing me that "this version of R is unavailable on your cpu. You need to download r.tools." In particular, I get this: WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/ Installing package into ‘C:/Users/Owner/OneDrive - Loyola University Chicago/Documents/R/win-library/4.1’ (as ‘lib’ is unspecified) How can I get around this?
David Keyes
August 6, 2021
For some packages, you do need to install Rtools. Can you go ahead and install it and let me know if that fixes your problem?
Lisa Laughlin
September 10, 2021
When I try to install the packages it tells me I need Rtools. > install.packages("tidyverse") WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/ trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/tidyverse_1.3.1.zip' Content type 'application/zip' length 430255 bytes (420 KB) downloaded 420 KB
When I try to install Rtools I get this > install.packages("Rtools") WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/ Warning in install.packages : package ‘Rtools’ is not available for this version of R
A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
David Keyes
September 10, 2021
If you are working on Windows, you may need to install Rtools. You can install it from here. Try that and let me know if everything works for you afterwards!
Lisa Laughlin
September 13, 2021
David, This is the message I get now; > install.packages("tidyverse") trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/tidyverse_1.3.1.zip' Content type 'application/zip' length 430255 bytes (420 KB) downloaded 420 KB
package ‘tidyverse’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in C:\Users\llaughlin\AppData\Local\Temp\RtmpkzgSJz\downloaded_packages > install.package("skimr") Error in install.package("skimr") : could not find function "install.package" > > # Load Packages ----------------------------------------------------------- > > # Load the tidyverse and skimr packages using the library function > library(tidyverse) Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): object 'pkgInfo' not found In addition: Warning message: In loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : package ‘scales’ has no 'package.rds' in Meta/ > library(skimr) > # Load the tidyverse and skimr packages using the library function > library(tidyverse) Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): object 'pkgInfo' not found In addition: Warning message: In loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : package ‘scales’ has no 'package.rds' in Meta/ >
David Keyes
September 13, 2021
I'm not entirely sure what's going on here, but it seems like it maybe didn't install the scales package as part of the tidyverse install. Can you try running
install.packages("scales")and then running everything again to see if it makes a difference?Lisa Laughlin
September 14, 2021
Now I get this; > install.packages("scales") trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/scales_1.1.1.zip' Content type 'application/zip' length 558551 bytes (545 KB) downloaded 545 KB
package ‘scales’ successfully unpacked and MD5 sums checked Warning in install.packages : cannot delete reparse point 'C:\Users\llaughlin\OneDrive - Grand View University\R\R-4.1.1\library/scales/Meta', reason 'There is a mismatch between the tag specified in the request and the tag present in the reparse point' Warning in install.packages : cannot remove prior installation of package ‘scales’ Warning in install.packages : cannot delete reparse point 'C:\Users\llaughlin\OneDrive - Grand View University\R\R-4.1.1\library/scales/Meta', reason 'There is a mismatch between the tag specified in the request and the tag present in the reparse point' Warning in install.packages : restored ‘scales’
The downloaded binary packages are in C:\Users\llaughlin\AppData\Local\Temp\Rtmp2tPr5P\downloaded_packages > install.packages("tidyverse") trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/tidyverse_1.3.1.zip' Content type 'application/zip' length 430255 bytes (420 KB) downloaded 420 KB
package ‘tidyverse’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in C:\Users\llaughlin\AppData\Local\Temp\Rtmp2tPr5P\downloaded_packages > install.packages("skimr") trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/skimr_2.1.3.zip' Content type 'application/zip' length 1238800 bytes (1.2 MB) downloaded 1.2 MB
package ‘skimr’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in C:\Users\llaughlin\AppData\Local\Temp\Rtmp2tPr5P\downloaded_packages > library(tidyverse) Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): object 'pkgInfo' not found In addition: Warning message: In loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : package ‘scales’ has no 'package.rds' in Meta/
Manav Jain
September 11, 2021
I got this error while installing tidyverse pkg ERROR: dependencies ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’, ‘xml2’ are not available for package ‘tidyverse’. How to resolve?
Manav Jain
September 12, 2021
solved
Israel Johnson
September 15, 2021
After I attempt to execute the library command for skimr I am not getting anything. The package successfully unpacked so it was no problem with that. Why is this happening?
David Keyes
September 16, 2021
You won't see anything when you load a package. It's only when you run a function from the package (e.g. skim(cars)) that you will see some output. Does that make sense?
Israel Johnson
September 16, 2021
Yes, it makes sense. Thank you Sir.
Kathleen Griesbach
September 16, 2021
Hello, posting the question from the live session here as we discussed. I was able to install both packages, but when I tried to load the skimr package I got this error message. Thanks in advance!
> library(skimr) Error: package or namespace load failed for ‘skimr’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘xfun’
David Keyes
September 16, 2021
Can you try installing the xfun package and then seeing if you can load skimr? Just run this in the console:
install.packages("xfun")Kathleen Griesbach
September 17, 2021
This seems to have worked! Thank you!
Or Oron
September 18, 2021
Can I press "Run" whilst it is running? Do I need to press "Run" after every line, or can I install it together?
David Keyes
September 20, 2021
You need to wait until it runs in order to run additional code. You can run any function, even if goes across multiple lines, by hitting run (or using a keyboard shortcut).
Lindsay Quarles
September 22, 2021
Is there anyway to get a list of the packages you already have installed?
David Keyes
September 22, 2021
Yup! See this quick video showing how.
Maggie Taylor
November 18, 2021
I'm having trouble loading tidyverse after install. I get the following error: Error: package or namespace load failed for ‘tidyverse’ in namespaceExport(ns, exports): undefined exports: format_tagged_na, is.labelled, is_tagged_na, labelled, labelled_spss, na_tag, print_labels, print_tagged_na, read_dta, read_por, read_sas, read_sav, read_spss, read_stata, read_xpt, tagged_na, vec_arith.haven_labelled, write_dta, write_sas, write_sav, write_xpt, zap_empty, zap_formats, zap_label, zap_labels, zap_missing, zap_widths In addition: Warning message: S3 methods ‘names<-.haven_labelled’, ‘as.character.haven_labelled’, ‘as_factor.data.frame’, ‘as_factor.haven_labelled’, ‘as_factor.labelled’, ‘format.haven_labelled’, ‘format.pillar_shaft_haven_labelled_chr’, ‘format.pillar_shaft_haven_labelled_num’, ‘is.na.haven_labelled_spss’, ‘levels.haven_labelled’, ‘median.haven_labelled’, ‘obj_print_footer.haven_labelled’, ‘obj_print_footer.haven_labelled_spss’, ‘obj_print_header.haven_labelled’, ‘quantile.haven_labelled’, ‘summary.haven_labelled’, ‘vec_arith.haven_labelled’, ‘vec_arith.haven_labelled.default’, ‘vec_arith.haven_labelled.haven_labelled’, ‘vec_arith.haven_labelled.numeric’, ‘vec_arith.numeric.haven_labelled’, ‘vec_cast.character.haven_labelled’, ‘vec_cast.character.haven_labelled_spss’, ‘vec_cast.double.haven_labelled’, ‘vec_cast.double.haven_labelled_spss’, ‘vec_cast.haven_labelled.character’, ‘vec_cast.haven_labelled.double’, ‘vec_cast.haven_labelled.haven_labelled’, ‘vec_cast.haven_labelled.haven_labelled_spss’, ‘vec_cast.haven_ [... truncated]
Any suggestions?
David Keyes
November 18, 2021
All of those functions that it says aren't loading are from the haven package. Can you try installing that with install.packages("haven") and then see if it works for you?
Maggie Taylor
November 19, 2021
I'm getting the same error even when I install haven before tidyverse. Peculiarly, if I load haven (with library("haven")), I also get the same error that I get when I load tidyverse (i.e., the error pasted above).
David Keyes
November 20, 2021
That's really, really odd. Can you please remove the tidyverse with remove.packages("tidyverse") and maybe the same for haven and then try again?
Maggie Taylor
November 23, 2021
I ended up having to remove the haven package from where it was saved in my file explorer/One Drive (I actually couldn't remove it for some reason, but I moved it to a different folder outside of where my other R packages are stored). Then I was able to reinstall and load tidyverse without any hiccups.
LILIANA CUBAS GAONA
January 14, 2022
Hi, when I run library (Tidyverse), I got: > library(tidyverse) -- Attaching packages -------------------------------------------------------------------------------- tidyverse 1.3.1 -- v ggplot2 3.3.5 v purrr 0.3.4 v tibble 3.1.6 v dplyr 1.0.7 v tidyr 1.1.4 v stringr 1.4.0 v readr 2.1.1 v forcats 0.5.1 -- Conflicts ----------------------------------------------------------------------------------- tidyverse_conflicts() -- x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag()
will I have problems with these conflicts? Many thanks in advance for your help
LILIANA CUBAS GAONA
January 14, 2022
I saw another person had the same problem as me and you have already provided with a nice reply. Many thanks
David Keyes
January 14, 2022
Glad you got it figured out!
Cameron Cross
January 14, 2022
Hi. I get the following error:
Error in read_csv("data/faketucky.csv") : could not find function "read_csv"
I went in and installed ellipsis, vctrs and Rcpp. Any ideas? Thanks!
Cameron Cross
January 14, 2022
Forgot to install readr...nevermind :-)
Caitlin Webb
February 9, 2022
Hi David,
When I tried to run tidyverse I get the following message: Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘dplyr’
I then ran install.package("dplyr") and got the following error:
installing the source package ‘dplyr’
trying URL 'https://cran.rstudio.com/src/contrib/dplyr_1.0.8.tar.gz' Content type 'application/x-gzip' length 880713 bytes (860 KB)
downloaded 860 KB
The downloaded source packages are in /private/var/folders/ty/l38ympg13j16pp4l5d3y8bc40000gn/T/Rtmp3ijuq4/downloaded_packages’
How should I go about rectifying this? Thanks!
Caitlin Webb
February 9, 2022
Nevermind - realised I needed to install Xcode Command-line Tools to my mac for it to work. All working fine now.
Charlie Hadley
February 9, 2022
Hi Caitlin - glad you were able to fix this!
jeph mathias
March 22, 2022
Thanks, that worked but got conflict messages on tidy verse. Didn't worry for now.
Gloria Li
May 13, 2022
Hi! Thanks for sharing this. I got this when I was trying to load skimr
library(skimr) Error in library(skimr) : there is no package called ‘skimr’
Charlie Hadley
May 16, 2022
Hello! This error is telling you that you haven't installed the {skimr} package yet. You need to run this code in the console first:
Cheers,
Charlie
Sarah Quackenbush
July 8, 2022
Hi, I've looked through all the previous comments and I don't seem to see my exact one here
With install.packages("tidyverse") I get:
Error in loadNamespace(j = 3.3.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted ERROR: lazy loading failed for package 'dbplyr'
Then with > library(tidyverse) I get Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘dbplyr’ In addition: Warning message: package ‘tidyverse’ was built under R version 4.0.5
I tried install.package("dbplyr") as that seemed to be what helped other people here, but all that I got there was
Error in loadNamespace(j = 3.3.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted ERROR: lazy loading failed for package 'dbplyr'
Any ideas?
Charlie Hadley
July 12, 2022
Hello Sarah,
This is an unusual error! I've looked for recent issues with the package in the GitHub repo but haven't found anything I can reliably point to. Could we try to use the dev build of the package?
Please first run install.packages("remotes")
Then install the dev version of the package with remotes::install_github("tidyverse/dbplyr")
Please do tell me if this doesn't succeed.
Thanks,
Charlie
Sarah Quackenbush
July 21, 2022
Hi Charlie,
Thanks for your speedy response, I'm sorry it took me so long to implement your suggestion. I successfully installed the "remotes" package, however when I do your second suggestion I get the following message:
> remotes::install_github(“tidyverse/dbplyr”) Error: unexpected input in "remotes::install_github(“"
Thank you in advance for any further help you can provide!
Sarah
David Keyes
July 22, 2022
It looks like you have two "" in your code. Can you please try it again with just one set of "?
remotes::install_github("tidyverse/dbplyr")Sarah Quackenbush
July 23, 2022
Hi David,
Thank you for this. I'm sorry I'm being such a pain with this.
Your change definitely worked to an extent. It got me to this message, so I input 1, as you can see:
hese packages have more recent versions available. It is recommended to update all of them. Which would you like to update?
1: All
2: CRAN packages only
3: None
4: rlang (1.0.2 -> 1.0.4) [CRAN] 5: cli (3.2.0 -> 3.3.0) [CRAN] 6: pillar (1.7.0 -> 1.8.0) [CRAN] 7: tibble (3.1.6 -> 3.1.8) [CRAN] 8: dplyr (1.0.8 -> 1.0.9) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 1
And most things seemed to go ok after that, except until the end, where I got this long error messages:
package ‘rlang’ successfully unpacked and MD5 sums checked Warning: cannot remove prior installation of package ‘rlang’ Warning: restored ‘rlang’ package ‘cli’ successfully unpacked and MD5 sums checked Warning: cannot remove prior installation of package ‘cli’ Warning: restored ‘cli’ package ‘tibble’ successfully unpacked and MD5 sums checked Warning: cannot remove prior installation of package ‘tibble’ Warning: restored ‘tibble’ package ‘dplyr’ successfully unpacked and MD5 sums checked Warning: cannot remove prior installation of package ‘dplyr’ Warning: restored ‘dplyr’
Which then eventually led to:
Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted ERROR: lazy loading failed for package 'dbplyr'
ERROR: package installation failed STDERR:
Error: Failed to install 'dbplyr' from GitHub: Failed to
R CMD buildpackage, trybuild = FALSE. In addition: Warning messages: 1: In file.copy(savedcopy, lib, recursive = TRUE) : problem copying C:\Users\sq37\Documents\R\win-library\4.0\00LOCK\rlang\libs\x64\rlang.dll to C:\Users\sq37\Documents\R\win-library\4.0\rlang\libs\x64\rlang.dll: Permission denied 2: In file.copy(savedcopy, lib, recursive = TRUE) : problem copying C:\Users\sq37\Documents\R\win-library\4.0\00LOCK\cli\libs\x64\cli.dll to C:\Users\sq37\Documents\R\win-library\4.0\cli\libs\x64\cli.dll: Permission denied 3: In file.copy(savedcopy, lib, recursive = TRUE) : problem copying C:\Users\sq37\Documents\R\win-library\4.0\00LOCK\tibble\libs\x64\tibble.dll to C:\Users\sq37\Documents\R\win-library\4.0\tibble\libs\x64\tibble.dll: Permission denied 4: In file.copy(savedcopy, lib, recursive = TRUE) : problem copying C:\Users\sq37\Documents\R\win-library\4.0\00LOCK\dplyr\libs\x64\dplyr.dll to C:\Users\sq37\Documents\R\win-library\4.0\dplyr\libs\x64\dplyr.dll: Permission deniedObviously I'm completely new to this, so could be way off the mark, but is this a problem with the version of "Cli"? If so, how do I update to this version >= 3.3.0? Or... Something else?
I'm sorry that I'm being such a pain! Thank you so much for your help so far.
Sarah
Brooke Callaghan
July 12, 2022
> library(tidyverse) Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘stringi’
Getting this error message. Please advise, thank you!
David Keyes
July 14, 2022
So what happened here is that, to install the tidyverse package, it also has to install a number of other packages, including stringi. For some reason, there was an error installing that. I'd at this point just try to install stringi manually using
install.packages("stringi"). After you've tried that, let me know if it fixes the issue.NIKHIL RATNA
July 19, 2022
I have a couple of naive queries
Charlie Hadley
July 19, 2022
Hi Nikhil,
These aren't naive queries!
.libPaths(). This is a centralised path available for all future R sessions. Packages are not installed in individual projects, so you only have to install the package once.After installing {skimr} did you run library(skimr)? If so you should then have the skim() function available in your autocompletion.
Cheers,
Charlie
NIKHIL RATNA
July 20, 2022
Hi Charlie, Thanks a lot for quick and detailed reply. yes skim function is available, not sure why there was no visible action in console with library function during loading. I tried using libpath function but it is showing an error e.g. .libPaths(tidyverse).. it says invalid path argument. anyway this is not my primary worry now. I have tried to import the faketucky CSV file which is in a folder on my desktop (saved automatically, the moment I downloaded the project). To import I first used <- read_csv("data/faketucky.csv") which gave me an error saying Error: 'data/faketucky.csv' does not exist in current working directory ('/Users/apple/Desktop/R course/New project'). new project was a dummy project created in the exercise "projects" as instructed. I am sort of stuck now. Please help
Charlie Hadley
July 21, 2022
Hello Nikhil,
The read_csv() issue is because you must ensure that your data files are inside of your RStudio Project, as demonstrated in the Projects video. Projects allow us to use relative file paths - which means paths start in the folder with your .Rproj file.
.libPaths() is not specific to packages. You do not need to run .libPaths(tidyverse). In general, most users never need to use the function.
Most of the time when you run library(pkg_name) there will be nothing displayed in the console. The function loads the package, meaning the functions appear in your autocompletion.
Thanks,
Charlie
Tatiana Bustos
July 20, 2022
I have some conflicts in my loaded packages. Can you explain what they mean? Pasting the console output below:
library(skimr) > library(tidyverse) ── Attaching packages ──────────────────────────────────────── tidyverse 1.3.2 ── ✔ ggplot2 3.3.6 ✔ purrr 0.3.4 ✔ tibble 3.1.7 ✔ dplyr 1.0.9 ✔ tidyr 1.2.0 ✔ stringr 1.4.0 ✔ readr 2.1.2 ✔ forcats 0.5.1 ── Conflicts ─────────────────────────────────────────── tidyverse_conflicts() ── ✖ dplyr::filter() masks stats::filter() ✖ dplyr::lag() masks stats::lag() > library(skimr) >
Sarah Quackenbush
July 28, 2022
Hi Charlie and David,
I apologise, I can't seem to reply to our thread. Thank you so much for your input on my previous messages! I checked the packages and they still were not installed. I decided to start from the beginning: uninstalled everything, reinstalled and started the course from the start. And it worked! I must have done something wrong first time round, but all fixed now. Thanks again for all your help!
Sarah
David Keyes
July 28, 2022
Honestly, this getting things to work but not always being quite sure how is not uncommon. Glad you got it figured out!
Shannon Peery
August 29, 2022
I am unable to load the library for tidyverse or skimr. I am in the exercises.r file working with the project. I have placed the correct syntax for installing the packages (not sure if it worked) and continue to get an "Error in library (skimr) : there is no package called 'skimr'" in the console box after trying to run it - using the run button. What might be the problem?
Charlie Hadley
August 30, 2022
Hi Shannon. That error is telling us that the {skimr} package isn't installed.
Could you follow these steps and tell me if they work?
install.packages("skimr")
library(skimr)
If this runs without errors then you have successfully installed and loaded the package. Which means you can then proceed to use the package as normal within script files.
Thanks,
Charlie
Julieth Silao
September 13, 2022
Thank you. it came with error but downloaded
Julieth Silao
September 13, 2022
skimr can not downloaded due to invailability
Charlie Hadley
September 14, 2022
Sorry about that. Could you tell me what the error is that you see?
Ellen Minzner
January 23, 2023
I believe I have both tidyverse and skimr installed, but got this message when trying to load them:
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(j library(skimr) Error: package or namespace load failed for ‘skimr’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘utf8’
David Keyes
January 23, 2023
Can you try running this line and then letting me know if it fixes the problem?
install.packages("utf8")Kathy Dowell
February 16, 2023
When loading tidyverse, I get this message. Do I need to do anything to address this? > library(tidyverse) ── Attaching packages ──────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.2 ── ✔ ggplot2 3.4.1 ✔ purrr 1.0.1 ✔ tibble 3.1.8 ✔ dplyr 1.1.0 ✔ tidyr 1.3.0 ✔ stringr 1.5.0 ✔ readr 2.1.4 ✔ forcats 1.0.0 ── Conflicts ─────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ── ✖ dplyr::filter() masks stats::filter() ✖ dplyr::lag() masks stats::lag()
David Keyes
February 16, 2023
Nothing to worry about! It's just tidyverse telling you which packages it's loading.
Andrew Paquin
March 12, 2023
Hi. I keep getting the following message in red: WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
The thing is, I installed Rtools yesterday as part of one of the earlier lessons. Perhaps I biffed it? Is there a way for me to check the status of my Rtools installation?
David Keyes
March 13, 2023
How exactly did you install Rtools? Did you download it and install it?
Andrew Paquin
March 15, 2023
I did. Not sure how I might have messed up.
Charlie Hadley
March 19, 2023
Hi Andrew,
RTools is only need for a small minority of R users who need to install R packages from source, and is absolutely not needed for the Rin3 program. I accept that the red warning can be annoying, but unfortunately getting used to unhelpful red messages in R is part of becoming fluent in using R.
It's possible that you installed an out of date version of RTools for your R instance, you should be using https://cran.r-project.org/bin/windows/Rtools/rtools42/rtools.html for all versions of R after 4.2 - which you should have installed.
Because RTools is needed for packing building the {pkgbuild} package has tools for testing if it is installed correctly. After ensuring you've installed RTools 4.2 run the following code
If you get back TRUE then everything is setup correctly!
Andrew Paquin
March 20, 2023
Thanks Charlie. That worked. I thought I'd downloaded and installed Rtools correctly, but I now see (based on the amount of time required this time around) that that attempt was flawed. I got the "TRUE" message, so I think I'm good to go.
Melissa Mullins
March 15, 2023
I've gotten this message (in red) several times but it hasn't impacted my ability to do stuff (yet). I know you said windows users "might" have to download R tools. Should I do that or does it matter? WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
Melissa Mullins
March 15, 2023
oops I see somebody else was asking about this too, but sounds like they installed R tools and are still getting message
Kiana Robinson
March 22, 2023
I'm getting an error with the following code:
> library(tidyverse) Error: package or namespace load failed for ‘tidyverse’: .onAttach failed in attachNamespace() for 'tidyverse', details: call: NULL error: package or namespace load failed for ‘ggplot2’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): namespace ‘rlang’ 1.0.4 is already loaded, but >= 1.1.0 is required
David Keyes
March 22, 2023
Can you please try running this line and then seeing if it works?
install.packages("rlang")Let me know, thanks!
Mercy Abarike
March 25, 2023
I installed the tidyverse and skimr packages sucessfully. i tried loading them using library(tidyverse) and library(skimr) and this is what I get. library(tidyverse) ── Attaching core tidyverse packages ─────────────── tidyverse 2.0.0 ── ✔ dplyr 1.1.0 ✔ readr 2.1.4 ✔ forcats 1.0.0 ✔ stringr 1.5.0 ✔ ggplot2 3.4.1 ✔ tibble 3.2.0 ✔ lubridate 1.9.2 ✔ tidyr 1.3.0 ✔ purrr 1.0.1
── Conflicts ───────────────────────────────── tidyverse_conflicts() ── ✖ dplyr::filter() masks stats::filter() ✖ dplyr::lag() masks stats::lag() ℹ Use the conflicted package to force all conflicts to become errors > library(skimr) Please what shoul i do
David Keyes
March 27, 2023
No need to do anything. This is just informative messages telling you which packages have been loaded.
Nicole Sanchez
June 13, 2023
Hello, David, I noticed in my code it stated something about conflicts? What is this? Do I need to make edits somewhere?
R version 4.3.0 (2023-04-21 ucrt) -- "Already Tomorrow" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
> install.packages("tidyverse") Installing package into ‘C:/Users/NicoleSanchez/AppData/Local/R/win-library/4.3’ (as ‘lib’ is unspecified) also installing the dependencies ‘fastmap’, ‘colorspace’, ‘bit’, ‘ps’, ‘base64enc’, ‘sass’, ‘digest’, ‘cachem’, ‘farver’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘viridisLite’, ‘rematch’, ‘bit64’, ‘prettyunits’, ‘processx’, ‘evaluate’, ‘highr’, ‘xfun’, ‘bslib’, ‘fontawesome’, ‘htmltools’, ‘jquerylib’, ‘tinytex’, ‘backports’, ‘ellipsis’, ‘generics’, ‘memoise’, ‘blob’, ‘DBI’, ‘tidyselect’, ‘data.table’, ‘gtable’, ‘isoband’, ‘scales’, ‘gargle’, ‘uuid’, ‘cellranger’, ‘ids’, ‘rematch2’, ‘cpp11’, ‘pkgconfig’, ‘mime’, ‘timechange’, ‘fansi’, ‘utf8’, ‘systemfonts’, ‘textshaping’, ‘vroom’, ‘tzdb’, ‘progress’, ‘callr’, ‘knitr’, ‘rmarkdown’, ‘selectr’, ‘stringi’, ‘broom’, ‘conflicted’, ‘dbplyr’, ‘dplyr’, ‘dtplyr’, ‘forcats’, ‘ggplot2’, ‘googledrive’, ‘googlesheets4’, ‘haven’, ‘hms’, ‘httr’, ‘lubridate’, ‘modelr’, ‘pillar’, ‘ragg’, ‘readr’, ‘readxl’, ‘reprex’, ‘rvest’, ‘stringr’, ‘tibble’, ‘tidyr’, ‘xml2’
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package ‘fastmap’ successfully unpacked and MD5 sums checked package ‘colorspace’ successfully unpacked and MD5 sums checked package ‘bit’ successfully unpacked and MD5 sums checked package ‘ps’ successfully unpacked and MD5 sums checked package ‘base64enc’ successfully unpacked and MD5 sums checked package ‘sass’ successfully unpacked and MD5 sums checked package ‘digest’ successfully unpacked and MD5 sums checked package ‘cachem’ successfully unpacked and MD5 sums checked package ‘farver’ successfully unpacked and MD5 sums checked package ‘labeling’ successfully unpacked and MD5 sums checked package ‘munsell’ successfully unpacked and MD5 sums checked package ‘RColorBrewer’ successfully unpacked and MD5 sums checked package ‘viridisLite’ successfully unpacked and MD5 sums checked package ‘rematch’ successfully unpacked and MD5 sums checked package ‘bit64’ successfully unpacked and MD5 sums checked package ‘prettyunits’ successfully unpacked and MD5 sums checked package ‘processx’ successfully unpacked and MD5 sums checked package ‘evaluate’ successfully unpacked and MD5 sums checked package ‘highr’ successfully unpacked and MD5 sums checked package ‘xfun’ successfully unpacked and MD5 sums checked package ‘bslib’ successfully unpacked and MD5 sums checked package ‘fontawesome’ successfully unpacked and MD5 sums checked package ‘htmltools’ successfully unpacked and MD5 sums checked package ‘jquerylib’ successfully unpacked and MD5 sums checked package ‘tinytex’ successfully unpacked and MD5 sums checked package ‘backports’ successfully unpacked and MD5 sums checked package ‘ellipsis’ successfully unpacked and MD5 sums checked package ‘generics’ successfully unpacked and MD5 sums checked package ‘memoise’ successfully unpacked and MD5 sums checked package ‘blob’ successfully unpacked and MD5 sums checked package ‘DBI’ successfully unpacked and MD5 sums checked package ‘tidyselect’ successfully unpacked and MD5 sums checked package ‘data.table’ successfully unpacked and MD5 sums checked package ‘gtable’ successfully unpacked and MD5 sums checked package ‘isoband’ successfully unpacked and MD5 sums checked package ‘scales’ successfully unpacked and MD5 sums checked package ‘gargle’ successfully unpacked and MD5 sums checked package ‘uuid’ successfully unpacked and MD5 sums checked package ‘cellranger’ successfully unpacked and MD5 sums checked package ‘ids’ successfully unpacked and MD5 sums checked package ‘rematch2’ successfully unpacked and MD5 sums checked package ‘cpp11’ successfully unpacked and MD5 sums checked package ‘pkgconfig’ successfully unpacked and MD5 sums checked package ‘mime’ successfully unpacked and MD5 sums checked package ‘timechange’ successfully unpacked and MD5 sums checked package ‘fansi’ successfully unpacked and MD5 sums checked package ‘utf8’ successfully unpacked and MD5 sums checked package ‘systemfonts’ successfully unpacked and MD5 sums checked package ‘textshaping’ successfully unpacked and MD5 sums checked package ‘vroom’ successfully unpacked and MD5 sums checked package ‘tzdb’ successfully unpacked and MD5 sums checked package ‘progress’ successfully unpacked and MD5 sums checked package ‘callr’ successfully unpacked and MD5 sums checked package ‘knitr’ successfully unpacked and MD5 sums checked package ‘rmarkdown’ successfully unpacked and MD5 sums checked package ‘selectr’ successfully unpacked and MD5 sums checked package ‘stringi’ successfully unpacked and MD5 sums checked package ‘broom’ successfully unpacked and MD5 sums checked package ‘conflicted’ successfully unpacked and MD5 sums checked package ‘dbplyr’ successfully unpacked and MD5 sums checked package ‘dplyr’ successfully unpacked and MD5 sums checked package ‘dtplyr’ successfully unpacked and MD5 sums checked package ‘forcats’ successfully unpacked and MD5 sums checked package ‘ggplot2’ successfully unpacked and MD5 sums checked package ‘googledrive’ successfully unpacked and MD5 sums checked package ‘googlesheets4’ successfully unpacked and MD5 sums checked package ‘haven’
David Keyes
June 13, 2023
Here's a quick video explanation!
Nicole Sanchez
June 13, 2023
Thank you David!